modified doxyfile again so that doxygen can be run from the OpenMW base directory (fixes various path problems)

Docs/Doxyfile

@@ -38,7 +38,7 @@ PROJECT_NUMBER         =
 # If a relative path is entered, it will be relative to the location
 # where doxygen was started. If left blank the current directory will be used.
 
-OUTPUT_DIRECTORY       = ../Doxygen
+OUTPUT_DIRECTORY       = Doxygen
 
 # If the CREATE_SUBDIRS tag is set to YES, then doxygen will create
 # 4096 sub-directories (in 2 levels) under the output directory of each output
@@ -573,10 +573,9 @@ WARN_LOGFILE           =
 # directories like "/usr/src/myproject". Separate the files or directories
 # with spaces.
 
-INPUT                  = ../apps
-                         ../components
-                         ../libs
-                         ../docs
+INPUT                  = apps
+                         components
+                         libs
 
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding, which is